Thanks! Forgot to mention that I'm using the BNC adapter with grabber cables which makes the GND status a bit unclear since there's GND, SGND, and WGND, and Ch1 and Ch2 share the one SGND. This produced rather a odd plot:
but then bypassing the BNC adapter produced something fairly similar:
I'll have to grab a known-good filter to see whether this is operator error or the one I'm testing is the problem, it's of unknown age so I don't know what state the electrolytics are in.