Thanks for the info @Fausto
We have swapped the chips for non-inverting as you mentioned but now, I am wondering if I should swap back and just invert the software controls since it seems the pull-down option is unable to keep the SSR-RACK in a clear "off" state on power up, but the pull-up option seems to create the expected output.
As for powering the SSR-RACK (5v only) via a relay that is certainly an option.
One last question, I see a lot of the MMC parts have been marked legacy and kind of buried on the Digilent website, are the SSR-RACK48 or the PCIe-DIO96H going end of life anytime soon?
Thanks!