grymoire666
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If the chip is a FT2232H, there are tools that can read existing EEPROMS, and reprogram blank chips. FTDI offers the free Windows tool FT_PROG for instance.
EEPROMs with Digilent license for JTAG with FT2232
in Sales Questions
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The Python pyftdi library has a utility named ftconf.py that can apparently program in a serial number, manufacturer's ID, etc.. It's described as experimental, but if you are stuck....